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    YCF20-like protein (DUF565) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824850, updated on 18-Sep-2024

    Summary

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    Official Full Name
    YCF20-like protein (DUF565)
    Primary source
    TAIR:AT3G56830
    Locus tag
    AT3G56830
    See related
    Araport:AT3G56830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21042430..21044503, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RmlC-type cupin Neighboring gene ncRNA Neighboring gene FAD-dependent oxidoreductase family protein Neighboring gene ABA-responsive element binding protein 3 Neighboring gene UBP1-associated protein 2A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutations in Arabidopsis YCF20-like genes affect thermal dissipation of excess absorbed light energy. Jung HS, et al. Planta, 2010 Mar. PMID 20087601, Free PMC Article
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035798.2
    NM_001084835.2
    NM_001339819.1
    NM_001339820.1
    NM_001339821.1
    NM_001339822.1
    NM_001339823.1
    NM_001339824.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YCF20-like protein (DUF565)
    NP_001030875.1
    • Protein of unknown function (DUF565); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT1G65420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078304.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT1G65420.1); Has 154 Blast hits to 154 proteins in 43 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    NP_001319770.1
    • Protein of unknown function (DUF565); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT1G65420.1); Has 152 Blast hits to 152 proteins in 43 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21042430..21044503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035798.2 → NP_001030875.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030875.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    2. NM_001084835.2 → NP_001078304.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078304.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    3. NM_001339823.1 → NP_001326685.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    4. NM_001339821.1 → NP_001326687.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    5. NM_001339820.1 → NP_001326686.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    6. NM_001339819.1 → NP_001319770.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    7. NM_001339824.1 → NP_001326684.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)

    8. NM_001339822.1 → NP_001326683.1  YCF20-like protein (DUF565) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0S9, Q9LES5
      Conserved Domains (1) summary
      pfam04483
      Location:132 → 187
      DUF565; Protein of unknown function (DUF565)
    Nucleotide Protein
    Heading Accession and Version

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