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    PRA1.B1 prenylated RAB acceptor 1.B1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824777, updated on 7-Sep-2023

    Summary

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    Gene symbol
    PRA1.B1
    Gene description
    prenylated RAB acceptor 1.B1
    Primary source
    Araport:AT3G56110
    Locus tag
    AT3G56110
    See related
    TAIR:AT3G56110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    prenylated RAB acceptor 1.B1
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    Genomic context

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    See PRA1.B1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (20820135..20823106, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ferritin 3 Neighboring gene meristematic receptor-like kinase Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene biotin/lipoyl attachment domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PRA1 gene family in Arabidopsis. Alvim Kamei CL, et al. Plant Physiol, 2008 Aug. PMID 18583532, Free PMC Article
    2. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203171.2
    NM_001339767.1
    NM_001339768.1
    NM_115469.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within vesicle-mediated transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    prenylated RAB acceptor 1.B1
    NP_001190100.1
    • prenylated RAB acceptor 1.B1 (PRA1.B1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B2 (TAIR:AT2G40380.1).
    NP_001319766.1
    • prenylated RAB acceptor 1.B1 (PRA1.B1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B2 (TAIR:AT2G40380.1); Has 577 Blast hits to 577 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 114; Plants - 309; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20820135..20823106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203171.2 → NP_001190100.1  prenylated RAB acceptor 1.B1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190100.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q940J2, Q9LYN0
      UniProtKB/TrEMBL
      A0A178VNJ7, A0A5S9XL93, A0A7G2ERN3
      Conserved Domains (1) summary
      pfam03208
      Location:39 → 181
      PRA1; PRA1 family protein

    2. NM_001339767.1 → NP_001319766.1  prenylated RAB acceptor 1.B1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q940J2, Q9LYN0
      UniProtKB/TrEMBL
      A0A178VNJ7, A0A5S9XL93, A0A7G2ERN3
      Conserved Domains (1) summary
      pfam03208
      Location:39 → 181
      PRA1; PRA1 family protein

    3. NM_001339768.1 → NP_001327380.1  prenylated RAB acceptor 1.B1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q940J2, Q9LYN0
      UniProtKB/TrEMBL
      A0A178VNJ7, A0A5S9XL93, A0A7G2ERN3
      Conserved Domains (1) summary
      pfam03208
      Location:39 → 181
      PRA1; PRA1 family protein

    4. NM_115469.3 → NP_191170.1  prenylated RAB acceptor 1.B1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191170.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q940J2, Q9LYN0
      UniProtKB/TrEMBL
      A0A178VNJ7, A0A5S9XL93, A0A7G2ERN3
      Conserved Domains (1) summary
      pfam03208
      Location:39 → 181
      PRA1; PRA1 family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYN0.1

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