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    RING/FYVE/PHD-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824373, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD-type zinc finger family protein
    Primary source
    TAIR:AT3G52100
    Locus tag
    AT3G52100
    See related
    Araport:AT3G52100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (19319223..19322985)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA/RNP complex-1-interacting phosphatase Neighboring gene uncharacterized protein Neighboring gene cation/hydrogen exchanger 28 Neighboring gene DNA-directed RNA polymerase, RBP11-like protein Neighboring gene DIS3-exonuclease-like protein Neighboring gene ncRNA Neighboring gene interferon-activable protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SINAT E3 Ubiquitin Ligases Mediate FREE1 and VPS23A Degradation to Modulate Abscisic Acid Signaling. Xia FN, et al. Plant Cell, 2020 Oct. PMID 32753431, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339550.1
    NM_115069.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    RING/FYVE/PHD-type zinc finger family protein
    NP_190778.2
    • RING/FYVE/PHD-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G08020.1); Has 2078 Blast hits to 1918 proteins in 172 species: Archae - 0; Bacteria - 21; Metazoa - 1521; Fungi - 60; Plants - 220; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19319223..19322985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339548.1 → NP_001327259.1  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRS3, A0A654FF18

    2. NM_001339549.1 → NP_001327260.1  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V841, A0A1I9LRS4, A0A384KS05, A0A654FF18
      Conserved Domains (2) summary
      PTZ00108
      Location:348 → 596
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      cl22851
      Location:280 → 334
      PHD_SF; PHD finger superfamily

    3. NM_115069.2 → NP_190778.2  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190778.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FF18, F4J5R1
      Conserved Domains (2) summary
      COG5082
      Location:181 → 268
      AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
      cl22851
      Location:298 → 352
      PHD_SF; PHD finger superfamily

    4. NM_001339550.1 → NP_001327261.1  RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRS5, A0A5S9XK11, A0A654FF18
    Nucleotide Protein
    Heading Accession and Version

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