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    SYP72 syntaxin of plants 72 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823666, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP72
    Official Full Name
    syntaxin of plants 72
    Primary source
    TAIR:AT3G45280
    Locus tag
    AT3G45280
    See related
    Araport:AT3G45280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP72; syntaxin of plants 72
    Summary
    syntaxin of plants 72 (SYP72)
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    Genomic context

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    See SYP72 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (16610655..16613521, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ECA1 gametogenesis related family protein Neighboring gene ECA1 gametogenesis related family protein Neighboring gene Seven transmembrane MLO family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The GET System Inserts the Tail-Anchored Protein, SYP72, into Endoplasmic Reticulum Membranes. Srivastava R, et al. Plant Physiol, 2017 Feb. PMID 27923985, Free PMC Article
    2. SYP72 interacts with the mechanosensitive channel MSL8 to protect pollen from hypoosmotic shock during hydration. Zhou X, et al. Nat Commun, 2022 Jan 10. PMID 35013278, Free PMC Article
    3. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SYP72 interacts with the mechanosensitive channel MSL8 to protect pollen from hypoosmotic shock during hydration.
      Title: SYP72 interacts with the mechanosensitive channel MSL8 to protect pollen from hypoosmotic shock during hydration.
    2. The role of the Guided Entry of Tail system in Arabidopsis was investigated by monitoring the membrane insertion of a tail-anchored protein, SYP72, a syntaxin.
      Title: The GET System Inserts the Tail-Anchored Protein, SYP72, into Endoplasmic Reticulum Membranes.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001339202.1
    NM_001339203.1
    NM_114397.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 72
    NP_001319688.1
    • syntaxin of plants 72 (SYP72); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 71 (TAIR:AT3G09740.1); Has 630 Blast hits to 628 proteins in 130 species: Archae - 2; Bacteria - 2; Metazoa - 232; Fungi - 58; Plants - 198; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16610655..16613521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339202.1 → NP_001319688.1  syntaxin of plants 72 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94KK6, Q9M3E9
      UniProtKB/TrEMBL
      A0A178VLS6, A0A384LL62, A0MF08, Q1PEI2
      Conserved Domains (1) summary
      cd15841
      Location:176 → 234
      SNARE_Qc; SNARE motif, subgroup Qc

    2. NM_114397.2 → NP_566878.1  syntaxin of plants 72 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566878.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94KK6, Q9M3E9
      UniProtKB/TrEMBL
      A0A178VLS6, A0A384LL62, A0MF08, Q1PEI2
      Conserved Domains (1) summary
      cd15841
      Location:176 → 234
      SNARE_Qc; SNARE motif, subgroup Qc

    3. NM_001339203.1 → NP_001326893.1  syntaxin of plants 72 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQN3, A0A5S9XII4
      Conserved Domains (1) summary
      cd15841
      Location:176 → 234
      SNARE_Qc; SNARE motif, subgroup Qc
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94KK6.1

    Gene LinkOut

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