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    spindle assembly checkpoint component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822466, updated on 18-Sep-2024

    Summary

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    Official Full Name
    spindle assembly checkpoint component
    Primary source
    TAIR:AT3G28370
    Locus tag
    AT3G28370
    See related
    Araport:AT3G28370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (10620534..10624618)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene P-glycoprotein 16 Neighboring gene ncRNA Neighboring gene P-glycoprotein 17 Neighboring gene P-glycoprotein 18 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SCEP1 and SCEP2 are two new components of the synaptonemal complex central element. Vrielynck N, et al. Nat Plants, 2023 Dec. PMID 37973938
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113757.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in synaptonemal complex assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in central element IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    spindle assembly checkpoint component
    NP_189478.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10620534..10624618
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338952.1 → NP_001326654.1  spindle assembly checkpoint component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMN8, A0A1I9LPY3, A0A384KYC0
      Conserved Domains (1) summary
      TIGR02168
      Location:8 → 210
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001338953.1 → NP_001326657.1  spindle assembly checkpoint component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMN8, A0A1I9LPY3, A0A384KYC0
      Conserved Domains (1) summary
      TIGR02168
      Location:8 → 210
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. NM_001338954.1 → NP_001326655.1  spindle assembly checkpoint component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMN8, A0A1I9LPY3, A0A384KYC0
      Conserved Domains (1) summary
      TIGR02168
      Location:8 → 210
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001338955.1 → NP_001326656.1  spindle assembly checkpoint component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPY5, A0A654FBK4

    5. NM_113757.2 → NP_189478.2  spindle assembly checkpoint component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189478.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FBK4, F4IZ28
      Conserved Domains (1) summary
      TIGR02168
      Location:9 → 207
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version

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