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    NRPD7 RNA polymerase Rpb7-like, N-terminal domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821862, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NRPD7
    Official Full Name
    RNA polymerase Rpb7-like, N-terminal domain-containing protein
    Primary source
    TAIR:AT3G22900
    Locus tag
    AT3G22900
    See related
    Araport:AT3G22900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7
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    Genomic context

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    See NRPD7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (8115065..8116253)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ATP sulfurylase 1 Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. Law JA, et al. PLoS Genet, 2011 Jul. PMID 21811420, Free PMC Article
    2. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Ream TS, et al. Mol Cell, 2009 Jan 30. PMID 19110459, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338603.1
    NM_113190.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase IV complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase Rpb7-like, N-terminal domain-containing protein
    NP_566719.1
    • NRPD7; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb7-like, N-terminal domain (TAIR:AT4G14660.1); Has 574 Blast hits to 574 proteins in 229 species: Archae - 66; Bacteria - 0; Metazoa - 137; Fungi - 175; Plants - 116; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8115065..8116253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113190.3 → NP_566719.1  RNA polymerase Rpb7-like, N-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566719.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LE42, Q9LIK8
      UniProtKB/TrEMBL
      A0A178VF32, A0A5S9XF48, A0A654F9T9
      Conserved Domains (2) summary
      cd04329
      Location:2 → 84
      RNAP_II_Rpb7_N; Rpb7, N-terminal ribonucleoprotein (RNP) domain. Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpc25 of RNAP III, RpoE of archaeal RNAP, and Rpa43 of eukaryotic RNAP I. Rpb7 heterodimerizes with Rpb4 and this heterodimer ...
      PTZ00162
      Location:40 → 174
      PTZ00162; DNA-directed RNA polymerase II subunit 7; Provisional

    2. NM_001338603.1 → NP_001326806.1  RNA polymerase Rpb7-like, N-terminal domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LE42, Q9LIK8
      UniProtKB/TrEMBL
      A0A178VF32, A0A5S9XF48, A0A654F9T9
      Conserved Domains (2) summary
      cd04329
      Location:2 → 84
      RNAP_II_Rpb7_N; Rpb7, N-terminal ribonucleoprotein (RNP) domain. Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpc25 of RNAP III, RpoE of archaeal RNAP, and Rpa43 of eukaryotic RNAP I. Rpb7 heterodimerizes with Rpb4 and this heterodimer ...
      PTZ00162
      Location:40 → 174
      PTZ00162; DNA-directed RNA polymerase II subunit 7; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LE42.1

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