PRK4 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: PRK4
Primary source: Araport:AT3G20190
Locus tag: AT3G20190
See related: TAIR:AT3G20190
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: pollen receptor like kinase 4
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Genomic context

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See PRK4 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 3

Sequence:: Chromosome: 3; NC_003074.8 (7044711..7047423)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NET2A is recruited to the plasma membrane by PRK4 and PRK5, and NET2A-PRK interactions mediate discreet sites of stable interactions between the cortical longitudinal actin cables and plasma membrane in the shank region of growing pollen tubes.
Title: Actin-membrane interactions mediated by NETWORKED2 in Arabidopsis pollen tubes through associations with Pollen Receptor-Like Kinase 4 and 5.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001338461.1

Supported by ESTs:

NM_112910.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables kinase activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein kinase activity	IEA Inferred from Electronic Annotation more info
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of pollen tube growth	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Leucine-rich repeat protein kinase family protein

NP_188654.2

Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G50610.1); Has 87494 Blast hits to 62015 proteins in 2065 species: Archae - 68; Bacteria - 4014; Metazoa - 18186; Fungi - 3311; Plants - 53872; Viruses - 182; Other Eukaryotes - 7861 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

7044711..7047423

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112910.5 → NP_188654.2 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_188654.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q84WQ0, Q9LJY0

UniProtKB/TrEMBL

A0A178VLF7, A0A654F901

Conserved Domains (4) summary

PLN00113
Location:119 → 587

PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

sd00033
Location:121 → 143

LRR_RI; leucine-rich repeat [structural motif]

pfam08263
Location:49 → 91

LRRNT_2; Leucine rich repeat N-terminal domain

cl21453
Location:378 → 626

PKc_like; Protein Kinases, catalytic domain
NM_001338461.1 → NP_001326911.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LQQ2

Conserved Domains (1) summary

cl21453
Location:189 → 437

PKc_like; Protein Kinases, catalytic domain