U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PTF1 plastid transcription factor 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821061, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PTF1
    Official Full Name
    plastid transcription factor 1
    Primary source
    TAIR:AT3G02150
    Locus tag
    AT3G02150
    See related
    Araport:AT3G02150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13; F1C9.6; plastid transcription factor 1; TCP13; TEOSINTE BRANCHED1; TFPD
    Summary
    a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PTF1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (390720..392767)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene AFP2 (ABI five-binding protein 2) family protein Neighboring gene ncRNA Neighboring gene Bromodomain transcription factor Neighboring gene longifolia2 Neighboring gene SPIRAL1-like3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. CIN-like TCP13 is essential for plant growth regulation under dehydration stress. Urano K, et al. Plant Mol Biol, 2022 Feb. PMID 35050466, Free PMC Article
    2. Identification of TCP13 as an Upstream Regulator of ATHB12 during Leaf Development. Hur YS, et al. Genes (Basel), 2019 Aug 26. PMID 31455029, Free PMC Article
    3. Involvement of a nuclear-encoded basic helix-loop-helix protein in transcription of the light-responsive promoter of psbD. Baba K, et al. Plant Physiol, 2001 Feb. PMID 11161017, Free PMC Article
    4. A protracted and dynamic maturation schedule underlies Arabidopsis leaf development. Efroni I, et al. Plant Cell, 2008 Sep. PMID 18805992, Free PMC Article
    5. Two types of putative nuclear factors that physically interact with histidine-containing phosphotransfer (Hpt) domains, signaling mediators in His-to-Asp phosphorelay, in Arabidopsis thaliana. Suzuki T, et al. Plant Cell Physiol, 2001 Jan. PMID 11158442

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis transcription factor TCP13 promotes shade avoidance syndrome-like responses by directly targeting a subset of shade-responsive gene promoters.
      Title: Arabidopsis transcription factor TCP13 promotes shade avoidance syndrome-like responses by directly targeting a subset of shade-responsive gene promoters.
    2. CIN-like TCP13 is essential for plant growth regulation under dehydration stress.
      Title: CIN-like TCP13 is essential for plant growth regulation under dehydration stress.
    3. TCP13 and its paralogs inhibit leaf growth by repressing ATHB12 expression.
      Title: Identification of TCP13 as an Upstream Regulator of ATHB12 during Leaf Development.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_111082.4
    NM_180170.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf senescence IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of development, heterochronic IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    plastid transcription factor 1
    NP_566164.1
    • plastid transcription factor 1 (PTF1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, regulation of transcription, leaf morphogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (TAIR:AT5G60970.1); Has 1398 Blast hits to 1398 proteins in 300 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 2; Plants - 1368; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    NP_850501.1
    • plastid transcription factor 1 (PTF1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, regulation of transcription, leaf morphogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (TAIR:AT5G60970.1); Has 1452 Blast hits to 1452 proteins in 313 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 8; Plants - 1374; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      390720..392767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180170.3 → NP_850501.1  plastid transcription factor 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850501.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEB5, Q9S7W5
      UniProtKB/TrEMBL
      A0A178VKM0, A0A5S9X8C9, A0A654F3C1
      Conserved Domains (1) summary
      cl23822
      Location:64 → 143
      TCP; TCP family transcription factor

    2. NM_111082.4 → NP_566164.1  plastid transcription factor 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566164.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7W5
      Conserved Domains (1) summary
      pfam03634
      Location:73 → 188
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7W5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools