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    AT3G15980 Coatomer, beta' subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820842, updated on 6-Oct-2023

    Summary

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    Gene symbol
    AT3G15980
    Gene description
    Coatomer, beta' subunit
    Primary source
    Araport:AT3G15980
    Locus tag
    AT3G15980
    See related
    TAIR:AT3G15980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G15980 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Sequence:
    Chromosome: 3; NC_003074.8 (5411278..5418632, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mismatched DNA binding / ATP binding protein Neighboring gene NUP50 (Nucleoporin 50 kDa) protein Neighboring gene ncRNA Neighboring gene sulfate transporter 3;4 Neighboring gene MAR binding filament-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PII signal transduction protein of Arabidopsis thaliana forms an arginine-regulated complex with plastid N-acetyl glutamate kinase. Chen YM, et al. J Biol Chem, 2006 Mar 3. PMID 16377628
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202979.1
    NM_112468.3
    NM_180261.2
    NM_180262.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Coatomer, beta' subunit
    NP_001189908.1
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1).
    NP_001319563.1
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1).
    NP_188219.2
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77165 Blast hits to 32767 proteins in 824 species: Archae - 72; Bacteria - 8610; Metazoa - 31043; Fungi - 17313; Plants - 9767; Viruses - 3; Other Eukaryotes - 10357 (source: NCBI BLink).
    NP_850592.1
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77112 Blast hits to 32696 proteins in 822 species: Archae - 74; Bacteria - 8637; Metazoa - 30981; Fungi - 17314; Plants - 9768; Viruses - 0; Other Eukaryotes - 10338 (source: NCBI BLink).
    NP_850593.1
    • Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 77165 Blast hits to 32767 proteins in 824 species: Archae - 72; Bacteria - 8610; Metazoa - 31043; Fungi - 17313; Plants - 9767; Viruses - 3; Other Eukaryotes - 10357 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5411278..5418632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338196.1 → NP_001327848.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
      Conserved Domains (3) summary
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:62 → 97
      7WD40; WD40 repeat [structural motif]
      pfam04053
      Location:319 → 764
      Coatomer_WDAD; Coatomer WD associated region

    2. NM_001338195.1 → NP_001319563.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
      Conserved Domains (3) summary
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:62 → 97
      7WD40; WD40 repeat [structural motif]
      pfam04053
      Location:319 → 764
      Coatomer_WDAD; Coatomer WD associated region

    3. NM_001338197.1 → NP_001327847.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTK3, A0A654F7N0

    4. NM_001202979.1 → NP_001189908.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189908.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F7N0, F4J1E5
      Conserved Domains (4) summary
      COG2319
      Location:24 → 447
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam04053
      Location:320 → 776
      Coatomer_WDAD; Coatomer WD associated region
      sd00039
      Location:62 → 97
      7WD40; WD40 repeat [structural motif]

    5. NM_180262.2 → NP_850593.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850593.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
      Conserved Domains (3) summary
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:62 → 97
      7WD40; WD40 repeat [structural motif]
      pfam04053
      Location:319 → 764
      Coatomer_WDAD; Coatomer WD associated region

    6. NM_180261.2 → NP_850592.1  Coatomer, beta' subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L828, Q9LW87
      UniProtKB/TrEMBL
      A0A654F7N0
      Conserved Domains (4) summary
      COG2319
      Location:24 → 474
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam04053
      Location:320 → 764
      Coatomer_WDAD; Coatomer WD associated region
      sd00039
      Location:62 → 97
      7WD40; WD40 repeat [structural motif]

    7. NM_112468.3 → NP_188219.2  Coatomer, beta' subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188219.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Z1, A0A384L3S6, A0A654F7N0, B9DFE3, F4J1E2
      Conserved Domains (3) summary
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:62 → 97
      7WD40; WD40 repeat [structural motif]
      pfam04053
      Location:319 → 764
      Coatomer_WDAD; Coatomer WD associated region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L828.1

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