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    NUP50 (Nucleoporin 50 kDa) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820841, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NUP50 (Nucleoporin 50 kDa) protein
    Primary source
    TAIR:AT3G15970
    Locus tag
    AT3G15970
    See related
    Araport:AT3G15970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (5408792..5411153, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase-like protein Neighboring gene mismatched DNA binding / ATP binding protein Neighboring gene Coatomer, beta' subunit Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds. Oishi A, et al. J Exp Bot, 2024 Jan 1. PMID 37849222
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds.
      Title: Nucleoporin 50 proteins affect longevity and salinity stress tolerance in seeds.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338194.1
    NM_112467.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NUP50 (Nucleoporin 50 kDa) protein
    NP_566532.1
    • NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), Nuclear pore complex, NUP2/50/61 (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT1G52380.1); Has 4078 Blast hits to 2719 proteins in 441 species: Archae - 18; Bacteria - 1103; Metazoa - 1379; Fungi - 710; Plants - 228; Viruses - 8; Other Eukaryotes - 632 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5408792..5411153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112467.3 → NP_566532.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566532.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXC8, Q8LG62, Q9LW88
      UniProtKB/TrEMBL
      A0A7G2EMZ4
      Conserved Domains (2) summary
      cd13169
      Location:326 → 443
      RanBD_NUP50_plant; Ran-binding protein 2, repeat 1
      pfam08911
      Location:13 → 76
      NUP50; NUP50 (Nucleoporin 50 kDa)

    2. NM_001338194.1 → NP_001326913.1  NUP50 (Nucleoporin 50 kDa) protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXC8, Q8LG62, Q9LW88
      UniProtKB/TrEMBL
      A0A7G2EMZ4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LW88.1

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