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    Metallo-hydrolase/oxidoreductase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820592, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Metallo-hydrolase/oxidoreductase superfamily protein
    Primary source
    TAIR:AT3G13800
    Locus tag
    AT3G13800
    See related
    Araport:AT3G13800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (4538328..4541823)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Glycosyl hydrolases family 32 protein Neighboring gene ncRNA Neighboring gene indeterminate(ID)-domain 11 Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084677.2
    NM_001338082.1
    NM_001338083.1
    NM_112233.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Metallo-hydrolase/oxidoreductase superfamily protein
    NP_001078146.1
    • Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: Metallo-hydrolase/oxidoreductase superfamily protein (TAIR:AT1G30300.1); Has 2805 Blast hits to 2783 proteins in 774 species: Archae - 62; Bacteria - 1390; Metazoa - 7; Fungi - 23; Plants - 100; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).
    NP_001319545.1
    • Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: Metallo-hydrolase/oxidoreductase superfamily protein (TAIR:AT1G30300.1); Has 2828 Blast hits to 2806 proteins in 769 species: Archae - 68; Bacteria - 1382; Metazoa - 7; Fungi - 23; Plants - 100; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4538328..4541823
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338082.1 → NP_001319545.1  Metallo-hydrolase/oxidoreductase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6S5, A0A654F6W7, Q570G3

    2. NM_001338083.1 → NP_001325740.1  Metallo-hydrolase/oxidoreductase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JEJ3, Q9LRW8
      Conserved Domains (2) summary
      COG1235
      Location:1 → 277
      PhnP; Phosphoribosyl 1,2-cyclic phosphodiesterase [Inorganic ion transport and metabolism]
      cd16279
      Location:1 → 209
      metallo-hydrolase-like_MBL-fold; uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo

    3. NM_001084677.2 → NP_001078146.1  Metallo-hydrolase/oxidoreductase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078146.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JEJ3, Q9LRW8
      Conserved Domains (2) summary
      COG1235
      Location:1 → 277
      PhnP; Phosphoribosyl 1,2-cyclic phosphodiesterase [Inorganic ion transport and metabolism]
      cd16279
      Location:1 → 209
      metallo-hydrolase-like_MBL-fold; uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo

    4. NM_112233.4 → NP_187996.2  Metallo-hydrolase/oxidoreductase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187996.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6S5, A0A654F6W7, Q570G3
      Conserved Domains (2) summary
      COG1235
      Location:80 → 359
      PhnP; Phosphoribosyl 1,2-cyclic phosphodiesterase [Inorganic ion transport and metabolism]
      cd16279
      Location:79 → 291
      metallo-hydrolase-like_MBL-fold; uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo
    Nucleotide Protein
    Heading Accession and Version

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