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    Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820493, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Primary source
    TAIR:AT3G13062
    Locus tag
    AT3G13062
    See related
    Araport:AT3G13062
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (4184340..4187453)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene evolutionarily conserved C-terminal region 5 Neighboring gene ncRNA Neighboring gene STRUBBELIG-receptor family 4 Neighboring gene CBS domain-containing protein / transporter associated domain-containing protein Neighboring gene uncharacterized protein Neighboring gene multidrug resistance-associated protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_112144.3
    NM_180242.2
    NM_180243.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    NP_566443.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G55960.1); Has 332 Blast hits to 332 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    NP_850573.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G55960.1); Has 330 Blast hits to 330 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    NP_850574.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G55960.1); Has 323 Blast hits to 323 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4184340..4187453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112144.3 → NP_566443.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566443.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEU7, A0A384KTL3, Q8GWN9, Q94C36
      Conserved Domains (1) summary
      cd08870
      Location:82 → 287
      START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins

    2. NM_180242.2 → NP_850573.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850573.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9UY99, Q8GWN9
      Conserved Domains (1) summary
      cd08870
      Location:82 → 287
      START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins

    3. NM_180243.2 → NP_850574.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850574.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JB32, Q8GWN9
      Conserved Domains (1) summary
      cd08870
      Location:82 → 295
      START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins
    Nucleotide Protein
    Heading Accession and Version

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