U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820138, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    SNARE-like superfamily protein
    Primary source
    TAIR:AT3G09800
    Locus tag
    AT3G09800
    See related
    Araport:AT3G09800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F8.39
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (3006428..3008610, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CRINKLY4 related 1 Neighboring gene ubiquitin 8 Neighboring gene isocitrate dehydrogenase VI Neighboring gene adenosine kinase 1 Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001337842.1
    NM_001337843.1
    NM_001337844.1
    NM_001337845.1
    NM_001337846.1
    NM_111815.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SNARE-like superfamily protein
    NP_566358.3
    • SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT4G08520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3006428..3008610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111815.5 → NP_566358.3  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566358.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1B6, Q3E7U0, Q84LG4, Q9S7S7
      UniProtKB/TrEMBL
      A0A178VER9, A0A1I9LRF7, A0A5S9XAP0
      Conserved Domains (1) summary
      cl02092
      Location:9 → 178
      Clat_adaptor_s; Clathrin adaptor complex small chain

    2. NM_001337842.1 → NP_001327153.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRF5

    3. NM_001337846.1 → NP_001327157.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRF9, A0A654F6Z4

    4. NM_001337845.1 → NP_001327154.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1B6, Q3E7U0, Q84LG4, Q9S7S7
      UniProtKB/TrEMBL
      A0A178VER9, A0A1I9LRF7, A0A5S9XAP0

    5. NM_001337844.1 → NP_001327155.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1B6, Q3E7U0, Q84LG4, Q9S7S7
      UniProtKB/TrEMBL
      A0A178VER9, A0A1I9LRF7, A0A5S9XAP0

    6. NM_001337843.1 → NP_001327156.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRF5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools