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    transmembrane protein, putative (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819934, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (Protein of unknown function, DUF538)
    Primary source
    TAIR:AT3G07460
    Locus tag
    AT3G07460
    See related
    Araport:AT3G07460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2384375..2385982, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF538) Neighboring gene 2Fe-2S ferredoxin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_148697.4
    NM_202519.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (Protein of unknown function, DUF538)
    NP_683539.1
    • Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07470.1); Has 535 Blast hits to 535 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_974248.1
    • Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2384375..2385982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148697.4 → NP_683539.1  transmembrane protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683539.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJP3, A0A384LQF8, Q8L7K5, Q8LCX5
      Conserved Domains (1) summary
      pfam04398
      Location:32 → 137
      DUF538; Protein of unknown function, DUF538

    2. NM_202519.1 → NP_974248.1  transmembrane protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974248.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F6E5, F4JEG0
      Conserved Domains (1) summary
      pfam04398
      Location:32 → 137
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version

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