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    AT2G42510 survival motor neuron interacting protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818851, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT2G42510
    Gene description
    survival motor neuron interacting protein
    Primary source
    Araport:AT2G42510
    Locus tag
    AT2G42510
    See related
    TAIR:AT2G42510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14N22.22; F14N22_22
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    Genomic context

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    See AT2G42510 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (17701381..17704690)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Copper amine oxidase family protein Neighboring gene protein phosphatase 2A-3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene cold regulated 15b Neighboring gene cold-regulated 15a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001161098.1
    NM_001336980.1
    NM_129812.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    survival motor neuron interacting protein
    NP_001154570.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
    NP_001318407.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 229 Blast hits to 211 proteins in 63 species: Archae - 4; Bacteria - 35; Metazoa - 50; Fungi - 9; Plants - 20; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
    NP_181779.4
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 358 Blast hits to 335 proteins in 89 species: Archae - 4; Bacteria - 46; Metazoa - 66; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17701381..17704690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336981.1 → NP_001325022.1  survival motor neuron interacting protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUY2, A0A1P8B1W9

    2. NM_001336982.1 → NP_001325020.1  survival motor neuron interacting protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVG7, A0A1P8B1V8

    3. NM_001336983.1 → NP_001325021.1  survival motor neuron interacting protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUY2, A0A1P8B1W4

    4. NM_001161098.1 → NP_001154570.1  survival motor neuron interacting protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154570.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F2H4, F4IN39
      Conserved Domains (1) summary
      pfam04938
      Location:454 → 614
      SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

    5. NM_129812.5 → NP_181779.4  survival motor neuron interacting protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181779.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EFN9, F4IN40
      Conserved Domains (1) summary
      pfam04938
      Location:436 → 499
      SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

    6. NM_001336980.1 → NP_001318407.1  survival motor neuron interacting protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVG7, F4IN41
    Nucleotide Protein
    Heading Accession and Version

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