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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818659, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT2G40640
    Locus tag
    AT2G40640
    See related
    Araport:AT2G40640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7D17.18; T7D17_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (16960964..16963215, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene expansin A8 Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene Uncharacterized conserved protein (UCP030365) Neighboring gene PRP38 family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336850.1
    NM_001336851.1
    NM_001336852.1
    NM_001336853.1
    NM_001336854.1
    NM_001336855.1
    NM_001336856.1
    NM_180001.4
    NM_180002.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001318393.1
    • RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G05230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850332.1
    • RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G05230.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_850333.1
    • RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G05230.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16960964..16963215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180001.4 → NP_850332.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850332.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22871, Q0WUK1, Q58FY4, Q67XS7, Q680U6, Q680Z3, Q8GUT1
      UniProtKB/TrEMBL
      A0A178VLV6, A0A5S9X5S3
      Conserved Domains (1) summary
      cl17238
      Location:209 → 247
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    2. NM_180002.3 → NP_850333.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPZ8
      Conserved Domains (2) summary
      cd00162
      Location:208 → 244
      RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
      cl17238
      Location:206 → 245
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_001336854.1 → NP_001323784.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPZ8, A0A1P8AY41

    4. NM_001336856.1 → NP_001323780.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPZ8, A0A1P8AY69
      Conserved Domains (2) summary
      cd00162
      Location:208 → 244
      RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
      cl17238
      Location:206 → 245
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. NM_001336855.1 → NP_001323781.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPZ8, A0A1P8AY69
      Conserved Domains (2) summary
      cd00162
      Location:208 → 244
      RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
      cl17238
      Location:206 → 245
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. NM_001336852.1 → NP_001323782.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPZ8, A0A1P8AY69
      Conserved Domains (2) summary
      cd00162
      Location:208 → 244
      RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
      cl17238
      Location:206 → 245
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    7. NM_001336851.1 → NP_001323783.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPZ8, A0A1P8AY69
      Conserved Domains (2) summary
      cd00162
      Location:208 → 244
      RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
      cl17238
      Location:206 → 245
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    8. NM_001336850.1 → NP_001318393.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE42

    9. NM_001336853.1 → NP_001323785.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY93
      Conserved Domains (2) summary
      cd00162
      Location:208 → 244
      RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
      cl17238
      Location:206 → 245
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58FY4.1

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