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    ARI7 IBR domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817709, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARI7
    Official Full Name
    IBR domain-containing protein
    Primary source
    TAIR:AT2G31510
    Locus tag
    AT2G31510
    See related
    Araport:AT2G31510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS ARIADNE 7; ARIADNE 7; ATARI7; T9H9.3; T9H9_3
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    Genomic context

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    See ARI7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Sequence:
    Chromosome: 2; NC_003071.7 (13416551..13421571, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene neuronal acetylcholine receptor subunit alpha-5 Neighboring gene calcium-dependent protein kinase 24 Neighboring gene pseudo Neighboring gene SecY protein transport family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336334.1
    NM_001336335.1
    NM_128708.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IBR domain-containing protein
    NP_180709.3
    • ARIADNE 7 (ARI7); FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G05890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13416551..13421571 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128708.5 → NP_180709.3  IBR domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180709.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84RR0, Q9SIQ6
      UniProtKB/TrEMBL
      A0A178VXL6, A0A5S9X2X3, A0A7G2EDJ5
      Conserved Domains (3) summary
      smart00647
      Location:206 → 268
      IBR; In Between Ring fingers
      cd16623
      Location:137 → 187
      RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
      pfam01485
      Location:290 → 329
      IBR; IBR domain, a half RING-finger domain

    2. NM_001336334.1 → NP_001324416.1  IBR domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B027, A0A7G2EDJ5
      Conserved Domains (3) summary
      smart00647
      Location:206 → 268
      IBR; In Between Ring fingers
      cd16623
      Location:137 → 187
      RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
      pfam01485
      Location:290 → 329
      IBR; IBR domain, a half RING-finger domain

    3. NM_001336335.1 → NP_001324417.1  IBR domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B029, A0A7G2EDJ5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84RR0.1

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