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    PBCP [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817569, updated on 11-Sep-2024

    Summary

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    Official Symbol
    PBCP
    Primary source
    TAIR:AT2G30170
    Locus tag
    AT2G30170
    See related
    Araport:AT2G30170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PHOTOSYSTEM II CORE PHOSPHATASE; T27E13.9; T27E13_9
    Summary
    Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (12879663..12881587, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene tRNA-Gly Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a photosystem II phosphatase involved in light acclimation in Arabidopsis. Samol I, et al. Plant Cell, 2012 Jun. PMID 22706287, Free PMC Article
    2. Loss of chloroplast-localized protein phosphatase 2Cs in Arabidopsis thaliana leads to enhancement of plant immunity and resistance to Xanthomonas campestris pv. campestris infection. Akimoto-Tomiyama C, et al. Mol Plant Pathol, 2018 May. PMID 28815858, Free PMC Article
    3. Significance of the photosystem II core phosphatase PBCP for plant viability and protein repair in thylakoid membranes. Puthiyaveetil S, et al. Plant Cell Physiol, 2014 Jul. PMID 24793754, Free PMC Article
    4. Genome-wide biochemical analysis of Arabidopsis protein phosphatase using a wheat cell-free system. Takahashi H, et al. FEBS Lett, 2012 Sep 21. PMID 22968126
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtPP2C62 and AtPP2C26 are suggested to be involved in both photosynthesis and suppression of the plant immune system.[AtPP2C26]
      Title: Loss of chloroplast-localized protein phosphatase 2Cs in Arabidopsis thaliana leads to enhancement of plant immunity and resistance to Xanthomonas campestris pv. campestris infection.
    2. Dephosphorylation of PSII subunits is required for efficient D1 degradation.
      Title: Significance of the photosystem II core phosphatase PBCP for plant viability and protein repair in thylakoid membranes.
    3. Photosystem II core phosphatase(PBCP) is required for efficient dephosphorylation of photosystem II proteins [PHOTOSYSTEM II CORE PHOSPHATASE] [PBCP]
      Title: Identification of a photosystem II phosphatase involved in light acclimation in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001336244.1
    NM_001336245.1
    NM_001336246.1
    NM_001336247.1
    NM_001336248.1
    NM_128572.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables myosin phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to light stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within peptidyl-threonine dephosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within thylakoid membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein phosphatase 2C family protein
    NP_001318317.1
    • Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66720.1); Has 893 Blast hits to 891 proteins in 246 species: Archae - 2; Bacteria - 86; Metazoa - 181; Fungi - 226; Plants - 226; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
    NP_565696.1
    • Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G16580.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12879663..12881587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084511.3 → NP_001077980.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077980.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64730
      Conserved Domains (1) summary
      smart00332
      Location:1 → 174
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain

    2. NM_128572.5 → NP_565696.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565696.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQM8, O64730, Q94K51
      UniProtKB/TrEMBL
      A0A178VWE2, A0A5S9X2N8, A0A7G2EDD1
      Conserved Domains (1) summary
      smart00332
      Location:39 → 251
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain

    3. NM_001336246.1 → NP_001323769.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY65

    4. NM_001336245.1 → NP_001323768.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY09

    5. NM_001336248.1 → NP_001323771.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY61

    6. NM_001336247.1 → NP_001323770.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY07

    7. NM_001336244.1 → NP_001318317.1  Protein phosphatase 2C family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE30
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64730.2

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