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    embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817188, updated on 18-Sep-2024

    Summary

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    Official Full Name
    embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein
    Primary source
    TAIR:AT2G26470
    Locus tag
    AT2G26470
    See related
    Araport:AT2G26470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J22.14; T9J22_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (11259142..11262586, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RED family protein Neighboring gene UDP-glucosyl transferase 76D1 Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336071.1
    NM_128204.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in protein-DNA covalent cross-linking repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein
    NP_180215.2
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11259142..11262586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128204.5 → NP_180215.2  embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180215.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X1D5, A0A654F720, Q8GZ60
      Conserved Domains (1) summary
      pfam02586
      Location:1 → 222
      SRAP; SOS response associated peptidase (SRAP)

    2. NM_001336071.1 → NP_001325340.1  embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2X4, A0A5S9X1D5
    Nucleotide Protein
    Heading Accession and Version

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