U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TRAF-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817070, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    TRAF-like family protein
    Primary source
    TAIR:AT2G25320
    Locus tag
    AT2G25320
    See related
    Araport:AT2G25320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F11.9; T22F11_9
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (10781622..10788235, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit-like protein (DUF2012) Neighboring gene ECA1 gametogenesis related family protein Neighboring gene TRAF-like family protein Neighboring gene vesicle-associated membrane protein 712

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Puncta-localized TRAF domain protein TC1b contributes to the autoimmunity of snc1. Ao K, et al. Plant J, 2023 May. PMID 36799433
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_128089.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to oomycetes IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    TRAF-like family protein
    NP_180104.3
    • TRAF-like family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G25330.1); Has 73652 Blast hits to 40883 proteins in 2342 species: Archae - 900; Bacteria - 9328; Metazoa - 35691; Fungi - 5783; Plants - 4303; Viruses - 204; Other Eukaryotes - 17443 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10781622..10788235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335989.1 → NP_001324607.1  TRAF-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VY62, A0A1P8B0P7, A0A384KF20, A0A654EW12
      Conserved Domains (3) summary
      COG1196
      Location:1361 → 1616
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00121
      Location:404 → 538
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl17018
      Location:936 → 1304
      FANC; Fanconi anemia ID complex proteins FANCI and FANCD2

    2. NM_001335988.1 → NP_001324608.1  TRAF-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0P6, A0A654EW12

    3. NM_128089.3 → NP_180104.3  TRAF-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180104.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EW12, Q0KKQ1
      Conserved Domains (5) summary
      cd00121
      Location:403 → 537
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      pfam06705
      Location:1345 → 1572
      SF-assemblin; SF-assemblin/beta giardin
      pfam10212
      Location:1342 → 1570
      TTKRSYEDQ; Predicted coiled-coil domain-containing protein
      cl12013
      Location:1478 → 1603
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17018
      Location:935 → 1303
      FANC; Fanconi anemia ID complex proteins FANCI and FANCD2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools