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    Tesmin/TSO1-like CXC domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816530, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tesmin/TSO1-like CXC domain-containing protein
    Primary source
    TAIR:AT2G20110
    Locus tag
    AT2G20110
    See related
    Araport:AT2G20110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2G17.9; T2G17_9
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (8683979..8687283)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene CONTINUOUS VASCULAR RING protein (DUF502) Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335661.1
    NM_127569.3
    NM_179664.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tesmin/TSO1-like CXC domain-containing protein
    NP_179601.1
    • Tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 1013 Blast hits to 701 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 299; Fungi - 6; Plants - 316; Viruses - 1; Other Eukaryotes - 387 (source: NCBI BLink).
    NP_849995.1
    • Tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 1016 Blast hits to 700 proteins in 97 species: Archae - 0; Bacteria - 2; Metazoa - 306; Fungi - 3; Plants - 316; Viruses - 1; Other Eukaryotes - 388 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8683979..8687283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127569.3 → NP_179601.1  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179601.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IUE5, Q8GUZ0, Q8GUZ1, Q8GUZ2, Q9SL70
      UniProtKB/TrEMBL
      A0A178VQM8, A0A5S9WZW6, A0A654EUC9
      Conserved Domains (1) summary
      pfam03638
      Location:204 → 238
      TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

    2. NM_179664.2 → NP_849995.1  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849995.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQM8, A0A5S9WZW6
      Conserved Domains (1) summary
      pfam03638
      Location:203 → 238
      TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

    3. NM_001335661.1 → NP_001325172.1  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQM8, A0A1P8B2C5, A0A5S9WZW6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SL70.1

    Gene LinkOut

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