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    CLL2 EPIDERMAL PATTERNING FACTOR-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3769880, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLL2
    Official Full Name
    EPIDERMAL PATTERNING FACTOR-like protein
    Primary source
    TAIR:AT4G14723
    Locus tag
    AT4G14723
    See related
    Araport:AT4G14723
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHALLAH-LIKE 2; EPFL4; epidermal patterning factor like 4
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    Genomic context

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    See CLL2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (8439899..8440901)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene acireductone dioxygenase 1 Neighboring gene TIFY domain/Divergent CCT motif family protein Neighboring gene miscRNA Neighboring gene Bax inhibitor-1 family protein Neighboring gene auxin canalization protein (DUF828)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An EPFL peptide signaling pathway promotes stamen elongation via enhancing filament cell proliferation to ensure successful self-pollination in Arabidopsis thaliana. He Y, et al. New Phytol, 2023 May. PMID 36772858
    2. Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem. Uchida N, et al. Proc Natl Acad Sci U S A, 2012 Apr 17. PMID 22474391, Free PMC Article
    3. EPFL Signals in the Boundary Region of the SAM Restrict Its Size and Promote Leaf Initiation. Kosentka PZ, et al. Plant Physiol, 2019 Jan. PMID 30409857, Free PMC Article
    4. Epidermal cell density is autoregulated via a secretory peptide, EPIDERMAL PATTERNING FACTOR 2 in Arabidopsis leaves. Hara K, et al. Plant Cell Physiol, 2009 Jun. PMID 19435754
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that EPFL4 (AT4G14723) and EPFL6 (AT2G30370, CHAL) physically associate with ER (ERECTA) in planta.
      Title: Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001036564.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables receptor ligand activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell signaling IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    involved_in guard cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in meristem maintenance IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in plant ovule development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in stamen filament development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in stomatal complex development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    EPIDERMAL PATTERNING FACTOR-like protein
    NP_001031641.1
    • BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8439899..8440901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036564.4 → NP_001031641.1  EPIDERMAL PATTERNING FACTOR-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031641.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V3I3
      UniProtKB/TrEMBL
      A0A178V213, A0A5S9XSE1
      Conserved Domains (1) summary
      pfam17181
      Location:58 → 109
      EPF; Epidermal patterning factor proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2V3I3.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials