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    nacc1b nucleus accumbens associated 1, BEN and BTB (POZ) domain containing b [ Danio rerio (zebrafish) ]

    Gene ID: 572093, updated on 2-Nov-2024

    Summary

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    Official Symbol
    nacc1bprovided by ZNC
    Official Full Name
    nucleus accumbens associated 1, BEN and BTB (POZ) domain containing bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-121212-1
    See related
    Ensembl:ENSDARG00000078238 AllianceGenome:ZFIN:ZDB-GENE-121212-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nacc1
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in telencephalon. Orthologous to human NACC1 (nucleus accumbens associated 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See nacc1b in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (31218956..31234455, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (30955792..30971493, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496712 Neighboring gene syntaxin 10 Neighboring gene tRNA methyltransferase 1 Neighboring gene mannosidase, alpha, class 2B, member 1 Neighboring gene si:dkey-238i5.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    nucleus accumbens-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      31218956..31234455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001922112.8 → XP_001922147.3  nucleus accumbens-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IHV2, A0A8M1QR14
      Related
      ENSDARP00000133639.1, ENSDART00000170700.2
      Conserved Domains (3) summary
      smart00225
      Location:63 → 155
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart01025
      Location:445 → 523
      BEN; The BEN domain is found in diverse animal proteins
      pfam00651
      Location:52 → 154
      BTB; BTB/POZ domain

    2. XM_068224375.1 → XP_068080476.1  nucleus accumbens-associated protein 1 isoform X2

    3. XM_068224376.1 → XP_068080477.1  nucleus accumbens-associated protein 1 isoform X2

      Related
      ENSDARP00000100618.3, ENSDART00000109698.4
    Nucleotide Protein
    Heading Accession and Version

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