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    igsf9bb immunoglobulin superfamily, member 9Bb [ Danio rerio (zebrafish) ]

    Gene ID: 569554, updated on 2-Nov-2024

    Summary

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    Official Symbol
    igsf9bbprovided by ZNC
    Official Full Name
    immunoglobulin superfamily, member 9Bbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091112-15
    See related
    Ensembl:ENSDARG00000069467 AllianceGenome:ZFIN:ZDB-GENE-091112-15
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-188m6.1
    Summary
    Predicted to be located in plasma membrane. Predicted to be active in neuron projection. Orthologous to human IGSF9B (immunoglobulin superfamily member 9B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See igsf9bb in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (24689336..24865466, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (24657423..24828870, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 32b Neighboring gene anaphase promoting complex subunit 13 Neighboring gene uncharacterized LOC103909454 Neighboring gene uncharacterized LOC137488817 Neighboring gene junctional adhesion molecule 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein turtle homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      24689336..24865466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216056.1 → XP_068072157.1  protein turtle homolog B isoform X4

    2. XM_068216054.1 → XP_068072155.1  protein turtle homolog B isoform X2

    3. XM_068216055.1 → XP_068072156.1  protein turtle homolog B isoform X3

    4. XM_009295418.4 → XP_009293693.1  protein turtle homolog B isoform X5

      UniProtKB/TrEMBL
      A0A8M3ATY0
      Conserved Domains (7) summary
      cd00096
      Location:41 → 113
      Ig; Immunoglobulin domain
      smart00408
      Location:151 → 208
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:144 → 223
      IG_like; Immunoglobulin like
      cd00063
      Location:509 → 604
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:227 → 319
      I-set; Immunoglobulin I-set domain
      pfam13895
      Location:326 → 414
      Ig_2; Immunoglobulin domain
      cl11960
      Location:440 → 504
      Ig; Immunoglobulin domain

    5. XM_068216053.1 → XP_068072154.1  protein turtle homolog B isoform X1

    6. XM_017353023.3 → XP_017208512.1  protein turtle homolog B isoform X6

      UniProtKB/TrEMBL
      A0A8M6Z3Y3
      Related
      ENSDARP00000117164.1, ENSDART00000142907.2
    Nucleotide Protein
    Heading Accession and Version

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