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    fam222ba family with sequence similarity 222 member Ba [ Danio rerio (zebrafish) ]

    Gene ID: 561123, updated on 2-Nov-2024

    Summary

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    Official Symbol
    fam222baprovided by ZNC
    Official Full Name
    family with sequence similarity 222 member Baprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060526-355
    See related
    Ensembl:ENSDARG00000059886 AllianceGenome:ZFIN:ZDB-GENE-060526-355
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-9e15.1
    Summary
    Orthologous to human FAM222B (family with sequence similarity 222 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See fam222ba in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (42162001..42246812, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (41563926..41580052, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 6 Neighboring gene sedoheptulokinase Neighboring gene transient receptor potential cation channel, subfamily V, member 1 Neighboring gene uncharacterized LOC137495623 Neighboring gene microRNA 451a Neighboring gene Era-like 12S mitochondrial rRNA chaperone 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. FAM222B Is Not a Likely Novel Candidate Gene for Cerebral Cavernous Malformations. Spiegler S, et al. Mol Syndromol, 2016 Jul. PMID 27587990, Free PMC Article
    2. Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish. Desvignes T, et al. Mar Genomics, 2016 Dec. PMID 27189439, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC561123

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126398.1 → NP_001119870.1  uncharacterized protein LOC561123

      Status: PREDICTED

      Source sequence(s)
      BX571977
      UniProtKB/TrEMBL
      A0A8M9PK94, B0S710
      Related
      ENSDARP00000113353.1, ENSDART00000145247.2
      Conserved Domains (1) summary
      pfam15258
      Location:27 → 594
      FAM222A; Protein family of FAM222A

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      42162001..42246812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476207.2 → XP_021331882.1  uncharacterized protein LOC561123 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PK94, B0S710
      Conserved Domains (1) summary
      pfam15258
      Location:27 → 594
      FAM222A; Protein family of FAM222A

    2. XM_021476206.2 → XP_021331881.1  uncharacterized protein LOC561123 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PK94, B0S710
      Conserved Domains (1) summary
      pfam15258
      Location:27 → 594
      FAM222A; Protein family of FAM222A
    Nucleotide Protein Strain
    Heading Accession and Version

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