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    gatd3 glutamine amidotransferase class 1 domain containing 3 [ Danio rerio (zebrafish) ]

    Gene ID: 550355, updated on 2-Nov-2024

    Summary

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    Official Symbol
    gatd3provided by ZNC
    Official Full Name
    glutamine amidotransferase class 1 domain containing 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-147
    See related
    Ensembl:ENSDARG00000020618 AllianceGenome:ZFIN:ZDB-GENE-050417-147
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    gatd3a; zgc:112056
    Summary
    Predicted to act upstream of or within glutamine metabolic process. Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; head; optic tectum; and optic vesicle. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See gatd3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (32797816..32804953, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (32987070..32994207, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene si:ch211-165b19.11 Neighboring gene oligodendrocyte lineage transcription factor 2 Neighboring gene myxovirus (influenza virus) resistance C Neighboring gene myxovirus (influenza virus) resistance E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within glutamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial
    Names
    ES1 protein homolog, mitochondrial
    glutamine amidotransferase class 1 domain containing 3A
    glutamine amidotransferase like class 1 domain containing 3A
    glutamine amidotransferase-like class 1 domain-containing protein 3A, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017662.2 → NP_001017662.1  glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial

      See identical proteins and their annotated locations for NP_001017662.1

      Status: VALIDATED

      Source sequence(s)
      CT030044
      UniProtKB/Swiss-Prot
      F1QCN0
      UniProtKB/TrEMBL
      Q567H2
      Related
      ENSDARP00000120266.1, ENSDART00000134763.3
      Conserved Domains (2) summary
      cd03133
      Location:32 → 252
      GATase1_ES1; Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1
      COG0693
      Location:38 → 186
      ThiJ; Putative intracellular protease/amidase [General function prediction only]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      32797816..32804953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F1QCN0.1 GenPept UniProtKB/Swiss-Prot:F1QCN0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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