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    ccdc9 coiled-coil domain containing 9 [ Danio rerio (zebrafish) ]

    Gene ID: 550140, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ccdc9provided by ZNC
    Official Full Name
    coiled-coil domain containing 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-520
    See related
    Ensembl:ENSDARG00000004636 AllianceGenome:ZFIN:ZDB-GENE-060929-520
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:6893135; im:7152076; zgc:152785
    Summary
    Orthologous to human CCDC9 (coiled-coil domain containing 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc9 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (26904127..26931554, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (26971251..26998678, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene PITPNM family member 3 Neighboring gene si:dkey-243i1.1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Da Neighboring gene BCAS3 microtubule associated cell migration factor Neighboring gene uncharacterized LOC110437907

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The first characterization of multidrug and toxin extrusion (MATE/SLC47) proteins in zebrafish (Danio rerio). Lončar J, et al. Sci Rep, 2016 Jun 30. PMID 27357367, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC152785

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075106.2 → NP_001068574.2  coiled-coil domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      BX571984, CR848825
      UniProtKB/TrEMBL
      A0A8M1N9Q2, F1R420
      Related
      ENSDARP00000022739.8, ENSDART00000027563.10
      Conserved Domains (1) summary
      pfam15266
      Location:246 → 382
      DUF4594; Domain of unknown function (DUF4594)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      26904127..26931554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481405.2 → XP_021337080.1  coiled-coil domain-containing protein 9 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QPU7
      Conserved Domains (1) summary
      pfam15266
      Location:246 → 399
      DUF4594; Domain of unknown function (DUF4594)

    2. XM_005157650.5 → XP_005157707.1  coiled-coil domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B3V0, F1QCF9
      Related
      ENSDARP00000109950.3, ENSDART00000126046.4
      Conserved Domains (1) summary
      pfam15266
      Location:246 → 398
      DUF4594; Domain of unknown function (DUF4594)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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