U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LSP1 lymphocyte specific protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 508832, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LSP1provided by VGNC
    Official Full Name
    lymphocyte specific protein 1provided by VGNC
    Primary source
    VGNC:VGNC:31063
    See related
    BGD:BT28023; Ensembl:ENSBTAG00000010447
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 29
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (49598905..49636903, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101902793 Neighboring gene mitochondrial ribosomal protein L23 Neighboring gene troponin T3, fast skeletal type Neighboring gene proline rich 33 Neighboring gene troponin I2, fast skeletal type Neighboring gene synaptotagmin 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC142338

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lymphocyte-specific protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075374.2 → NP_001068842.1  lymphocyte-specific protein 1

      See identical proteins and their annotated locations for NP_001068842.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120173
      UniProtKB/TrEMBL
      A0A3Q1M894, F6R233, Q0P5E0
      Related
      ENSBTAP00000013787.5, ENSBTAT00000013787.5
      Conserved Domains (2) summary
      PRK13108
      Location:2 → 143
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      pfam02029
      Location:215 → 338
      Caldesmon; Caldesmon

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      49598905..49636903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227326.2 → XP_005227383.1  lymphocyte-specific protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M894, A0AAA9U0P7
      Related
      ENSBTAP00000103225.1, ENSBTAT00000132710.1
      Conserved Domains (2) summary
      PRK13108
      Location:15 → 141
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      pfam02029
      Location:213 → 336
      Caldesmon; Caldesmon

    2. XM_059882827.1 → XP_059738810.1  lymphocyte-specific protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M714, A0A3Q1M894
      Related
      ENSBTAP00000064181.2, ENSBTAT00000067077.2

    3. XM_059882830.1 → XP_059738813.1  lymphocyte-specific protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1M894

    4. XM_005227324.5 → XP_005227381.1  lymphocyte-specific protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M894
      Conserved Domains (2) summary
      PRK13108
      Location:1 → 173
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      pfam02029
      Location:245 → 368
      Caldesmon; Caldesmon

    5. XM_059882829.1 → XP_059738812.1  lymphocyte-specific protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1M894, A0AAA9TK08
      Related
      ENSBTAP00000098700.1, ENSBTAT00000121228.1

    6. XM_059882828.1 → XP_059738811.1  lymphocyte-specific protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M894
      Related
      ENSBTAP00000064640.1, ENSBTAT00000074566.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials