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    ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [ Canis lupus familiaris (dog) ]

    Gene ID: 491265, updated on 5-Mar-2024

    Summary

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    Gene symbol
    ABO
    Gene description
    ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
    See related
    Ensembl:ENSCAFG00845009581
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ABO in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (50622683..50632476, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (49003262..49012806, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (49804746..49814294, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (49385323..49394880, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (49699814..49709357, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene beta-lactoglobulin-2 Neighboring gene odorant binding protein 2B Neighboring gene histo-blood group ABO system transferase 1-like Neighboring gene surfeit 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histo-blood group ABO system transferase
    Names
    ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
    putative Histo-blood group ABO system transferase
    NP_001271365.1
    XP_038530983.1
    XP_038530984.1
    XP_038530985.1
    XP_038530986.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001284436.1 → NP_001271365.1  histo-blood group ABO system transferase

      See identical proteins and their annotated locations for NP_001271365.1

      Status: PROVISIONAL

      Source sequence(s)
      AB638847
      UniProtKB/TrEMBL
      A0A8C0M3T6, A0A8C0PMD0, F1PEJ9
      Related
      ENSCAFP00845013136.1, ENSCAFT00845016880.1
      Conserved Domains (1) summary
      pfam03414
      Location:66 → 351
      Glyco_transf_6; Glycosyltransferase family 6

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      50622683..50632476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038675057.1 → XP_038530985.1  histo-blood group ABO system transferase isoform X3

      UniProtKB/TrEMBL
      A0A8C0M3T6
      Conserved Domains (1) summary
      pfam03414
      Location:44 → 332
      Glyco_transf_6; Glycosyltransferase family 6

    2. XM_038675058.1 → XP_038530986.1  histo-blood group ABO system transferase isoform X4

      UniProtKB/TrEMBL
      A0A8C0PZ47
      Conserved Domains (1) summary
      pfam03414
      Location:21 → 309
      Glyco_transf_6; Glycosyltransferase family 6

    3. XM_038675056.1 → XP_038530984.1  histo-blood group ABO system transferase isoform X2

      UniProtKB/TrEMBL
      A0A8C0M3T6
      Conserved Domains (1) summary
      pfam03414
      Location:68 → 356
      Glyco_transf_6; Glycosyltransferase family 6

    4. XM_038675055.1 → XP_038530983.1  histo-blood group ABO system transferase isoform X1

      UniProtKB/TrEMBL
      A0A8C0M3T6
      Conserved Domains (1) summary
      pfam03414
      Location:87 → 375
      Glyco_transf_6; Glycosyltransferase family 6

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      49385323..49394880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      49699814..49709357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      49804746..49814294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      49003262..49012806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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