U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 [ Danio rerio (zebrafish) ]

    Gene ID: 449761, updated on 11-Apr-2024

    Summary

    Official Symbol
    elapor1provided by ZNC
    Official Full Name
    endosome-lysosome associated apoptosis and autophagy regulator 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041008-93
    See related
    Ensembl:ENSDARG00000042899 AllianceGenome:ZFIN:ZDB-GENE-041008-93
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7136654; si:ch211-163l21.8
    Summary
    Predicted to be involved in autophagosome assembly and positive regulation of vacuole organization. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Predicted to colocalize with late endosome; lysosome; and trans-Golgi network. Is expressed in anterior axial hypoblast; endocrine system; polster; and pronephric duct. Orthologous to human ELAPOR1 (endosome-lysosome associated apoptosis and autophagy regulator 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See elapor1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (23784726..23809697)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (23763390..23788458)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene innate immunity activator a Neighboring gene si:ch211-163l21.7 Neighboring gene zgc:195245 Neighboring gene basal body orientation factor 1a Neighboring gene mitogen-activated protein kinase 14a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of vacuole organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    colocalizes_with late endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    colocalizes_with lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    colocalizes_with trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    UPF0577 protein KIAA1324 homolog; endosome-lysosome associated apoptosis and autophagy regulator 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      23784726..23809697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478432.1XP_021334107.1  UPF0577 protein KIAA1324 homolog

      UniProtKB/TrEMBL
      A0A2R8Q613, A0A8M9PRE1
      Related
      ENSDARP00000148527.1, ENSDART00000189457.1
      Conserved Domains (1) summary
      pfam07699
      Location:367396
      Ephrin_rec_like; Putative ephrin-receptor like

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394724.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      44443..67786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690959.6XP_696051.3  UPF0577 protein KIAA1324 homolog

      UniProtKB/TrEMBL
      A0A8N7UW12
      Conserved Domains (2) summary
      pfam07562
      Location:340384
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      pfam07699
      Location:367396
      Ephrin_rec_like; Putative ephrin-receptor like