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    GPATCH3 G-patch domain containing 3 [ Gallus gallus (chicken) ]

    Gene ID: 419577, updated on 17-Aug-2024

    Summary

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    Symbol
    GPATCH3provided by CGNC
    Full Name
    G-patch domain containing 3provided by CGNC
    Primary source
    CGNC:578
    See related
    Ensembl:ENSGALG00010013093
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    GPATC3
    Orthologs
    human mouse all
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    Genomic context

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    See GPATCH3 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (2177237..2181782, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (1946094..1950635, complement)

    Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene stratifin Neighboring gene GPN-loop GTPase 2 Neighboring gene nuclear receptor subfamily 0 group B member 2 Neighboring gene nuclear distribution C, dynein complex regulator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Species-specific mechanisms for cholesterol 7alpha-hydroxylase (CYP7A1) regulation by drugs and bile acids. Handschin C, et al. Arch Biochem Biophys, 2005 Feb 1. PMID 15629111
    2. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
    3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of RIG-I signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of type I interferon production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G patch domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001198540.3 → NP_001185469.1  G patch domain-containing protein 3

      Status: VALIDATED

      Source sequence(s)
      BU269686, CK609783, CN234652, HAEK01066323, HAEK01194019, HAEK01199846, JAENSK010000339
      UniProtKB/TrEMBL
      F1NCY9
      Related
      ENSGALP00010018314.1, ENSGALT00010031388.1
      Conserved Domains (1) summary
      smart00443
      Location:377 → 423
      G_patch; glycine rich nucleic binding domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2177237..2181782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1946094..1950635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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