U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    XIRP1 xin actin binding repeat containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 374266, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Symbol
    XIRP1provided by CGNC
    Full Name
    xin actin binding repeat containing 1provided by CGNC
    Primary source
    CGNC:49109
    See related
    Ensembl:ENSGALG00010026630
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    XIN; CMYA3; XIRP2
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XIRP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (4971055..5004248, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (4973606..5006785, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 13-like Neighboring gene uncharacterized LOC121109558 Neighboring gene solute carrier family 22 member 13 Neighboring gene uncharacterized LOC101749395 Neighboring gene cysteine and serine rich nuclear protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Differential displaying of mRNAs from the atrioventricular region of developing chicken hearts at stages 15 and 21. Wang DZ, et al. Front Biosci, 1996 Jan 1. PMID 9159189
    2. Requirement of a novel gene, Xin, in cardiac morphogenesis. Wang DZ, et al. Development, 1999 Mar. PMID 10021346
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    xin actin-binding repeat-containing protein 1
    Names
    cardiac morphogenesis
    cardiomyopathy associated 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204348.4 → NP_989679.4  xin actin-binding repeat-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000035
      UniProtKB/TrEMBL
      A0A8V1A137, A0A8V1A673
      Related
      ENSGALP00010039579.1, ENSGALT00010064659.1
      Conserved Domains (2) summary
      COG4717
      Location:2046 → 2235
      YhaN; Uncharacterized protein YhaN, contains AAA domain [Function unknown]
      COG5281
      Location:1180 → 1589
      COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4971055..5004248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281203.4 → XP_015136689.2  xin actin-binding repeat-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A673
      Conserved Domains (2) summary
      COG4717
      Location:2343 → 2532
      YhaN; Uncharacterized protein YhaN, contains AAA domain [Function unknown]
      COG5281
      Location:1477 → 1886
      COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4973606..5006785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046910212.1 → XP_046766168.1  xin actin-binding repeat-containing protein 1 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91957.3 GenPept UniProtKB/Swiss-Prot:Q91957

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.