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    Agr2 anterior gradient 2 [ Mus musculus (house mouse) ]

    Gene ID: 23795, updated on 2-Nov-2024

    Summary

    Official Symbol
    Agr2provided by MGI
    Official Full Name
    anterior gradient 2provided by MGI
    Primary source
    MGI:MGI:1344405
    See related
    Ensembl:ENSMUSG00000020581 AllianceGenome:MGI:1344405
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Agr2h; Gob-4; HAG-2; XAG-2; mAG-2
    Summary
    Predicted to enable dystroglycan binding activity; epidermal growth factor receptor binding activity; and protein homodimerization activity. Involved in digestive tract morphogenesis; mucus secretion; and positive regulation of developmental growth. Acts upstream of or within inflammatory response and lung goblet cell differentiation. Located in endoplasmic reticulum. Is expressed in several structures, including eye; genitourinary system; gut; liver; and lung. Orthologous to human AGR2 (anterior gradient 2, protein disulphide isomerase family member). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in large intestine adult (RPKM 438.3), colon adult (RPKM 350.8) and 4 other tissues See more
    Orthologs
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    Genomic context

    See Agr2 in Genome Data Viewer
    Location:
    12 A3; 12 16.18 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (36042924..36054080)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (35992925..36004081)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9472 Neighboring gene STARR-seq mESC enhancer starr_31911 Neighboring gene anterior gradient 3 Neighboring gene STARR-seq mESC enhancer starr_31913 Neighboring gene tetraspanin 13 Neighboring gene STARR-positive B cell enhancer ABC_E10744 Neighboring gene STARR-positive B cell enhancer ABC_E2382 Neighboring gene STARR-seq mESC enhancer starr_31914 Neighboring gene ubiquitin-conjugating enzyme E2F (putative), retrotransposed

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (7) 
    • Targeted (9)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables dystroglycan binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables dystroglycan binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables dystroglycan binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables epidermal growth factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables epidermal growth factor receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell chemotaxis ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in digestive tract morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within endoplasmic reticulum unfolded protein response ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    acts_upstream_of_or_within inflammatory response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within lung goblet cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within mucus secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mucus secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of IRE1-mediated unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of IRE1-mediated unfolded protein response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of PERK-mediated unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of PERK-mediated unfolded protein response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell-substrate adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell-substrate adhesion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of developmental growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of epidermal growth factor receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of epidermal growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of protein localization to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein folding in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 

    General protein information

    Preferred Names
    anterior gradient protein 2 homolog
    Names
    AG-2
    anterior gradient 2 homolog
    protein Gob-4
    secreted cement gland protein XAG-2 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011783.2NP_035913.1  anterior gradient protein 2 homolog precursor

      See identical proteins and their annotated locations for NP_035913.1

      Status: PROVISIONAL

      Source sequence(s)
      CT030196
      Consensus CDS
      CCDS25881.1
      UniProtKB/Swiss-Prot
      A2CGA2, O88312
      Related
      ENSMUSP00000020898.6, ENSMUST00000020898.12
      Conserved Domains (1) summary
      cd02960
      Location:47175
      AGR; Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      36042924..36054080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)