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    si:ch211-139g16.8 si:ch211-139g16.8 [ Danio rerio (zebrafish) ]

    Gene ID: 101885410, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch211-139g16.8provided by ZNC
    Official Full Name
    si:ch211-139g16.8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100922-126
    See related
    Ensembl:ENSDARG00000093074 AllianceGenome:ZFIN:ZDB-GENE-100922-126
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in plasma membrane. Orthologous to human IGSF6 (immunoglobulin superfamily member 6). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-139g16.8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (18389371..18397260)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (18239636..18246868)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene sperm associated antigen 9a Neighboring gene uncharacterized LOC108182811 Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2a Neighboring gene ribosomal protein S2 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    immunoglobulin superfamily member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      18389371..18397260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163892.5 → XP_005163949.3  immunoglobulin superfamily member 6

      Related
      ENSDARP00000123634.1, ENSDART00000146114.2
    Nucleotide Protein Strain
    Heading Accession and Version

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