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    Gm21451 predicted gene, 21451 [ Mus musculus (house mouse) ]

    Gene ID: 100862072, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Gm21451provided by MGI
    Official Full Name
    predicted gene, 21451provided by MGI
    Primary source
    MGI:MGI:5434806
    See related
    AllianceGenome:MGI:5434806
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in ovary adult (RPKM 42.4), limb E14.5 (RPKM 26.4) and 18 other tissues See more
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    Genomic context

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    See Gm21451 in Genome Data Viewer
    Location:
    14 D2; 14
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (69627810..69729986)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (69390417..69477453)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 16677 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 4 Neighboring gene predicted gene, 53864 Neighboring gene predicted gene, 16867 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69896143-69896444 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69903084-69903385 Neighboring gene STARR-seq mESC enhancer starr_37056 Neighboring gene predicted gene 27179 Neighboring gene predicted gene, 41194 Neighboring gene predicted gene 27174 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69942500-69942801 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69943894-69944195 Neighboring gene STARR-positive B cell enhancer mm9_chr14:69955006-69955307

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    lysyl oxidase homolog 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      69627810..69729986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159022.1 → XP_036014915.1  lysyl oxidase homolog 2 isoform X5

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:558 → 723
      Lysyl_oxidase; Lysyl oxidase

    2. XM_030248104.2 → XP_030103964.1  lysyl oxidase homolog 2 isoform X4

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:557 → 720
      Lysyl_oxidase; Lysyl oxidase

    3. XM_006519892.5 → XP_006519955.1  lysyl oxidase homolog 2 isoform X1

      See identical proteins and their annotated locations for XP_006519955.1

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:557 → 721
      Lysyl_oxidase; Lysyl oxidase

    4. XM_036159020.1 → XP_036014913.1  lysyl oxidase homolog 2 isoform X2

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:557 → 719
      Lysyl_oxidase; Lysyl oxidase

    5. XM_036159021.1 → XP_036014914.1  lysyl oxidase homolog 2 isoform X3

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:551 → 713
      Lysyl_oxidase; Lysyl oxidase

    6. XM_006519897.4 → XP_006519960.1  lysyl oxidase homolog 2 isoform X7

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:557 → 720
      Lysyl_oxidase; Lysyl oxidase

    7. XM_036159023.1 → XP_036014916.1  lysyl oxidase homolog 2 isoform X6

      Conserved Domains (2) summary
      smart00202
      Location:61 → 162
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:558 → 720
      Lysyl_oxidase; Lysyl oxidase
    Nucleotide Protein
    Heading Accession and Version

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