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    gprin3b GPRIN family member 3b [ Danio rerio (zebrafish) ]

    Gene ID: 100536832, updated on 12-Sep-2024

    Summary

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    Official Symbol
    gprin3bprovided by ZNC
    Official Full Name
    GPRIN family member 3bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-376
    See related
    Ensembl:ENSDARG00000075043 AllianceGenome:ZFIN:ZDB-GENE-090313-376
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    gprin3; si:dkeyp-123h10.2
    Summary
    Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN3 (GPRIN family member 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See gprin3b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (50847543..50919286, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (50203980..50254693, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 13 member A Neighboring gene zgc:154142 Neighboring gene orthodenticle homeobox 2a Neighboring gene malate dehydrogenase 1Aa, NAD (soluble)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in neuron projection development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G protein-regulated inducer of neurite outgrowth 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      50847543..50919286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221741.1 → XP_068077842.1  G protein-regulated inducer of neurite outgrowth 3

    2. XM_021477275.2 → XP_021332950.1  G protein-regulated inducer of neurite outgrowth 3

      UniProtKB/TrEMBL
      A0A8M9QGD4, B8A5Y8
      Conserved Domains (1) summary
      pfam15235
      Location:459 → 583
      GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

    3. XM_005155400.4 → XP_005155457.1  G protein-regulated inducer of neurite outgrowth 3

      See identical proteins and their annotated locations for XP_005155457.1

      UniProtKB/TrEMBL
      A0A8M9QGD4, B8A5Y8
      Related
      ENSDARP00000116939.1, ENSDART00000137648.2
      Conserved Domains (1) summary
      pfam15235
      Location:459 → 583
      GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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