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    jac11 jacalin 11 [ Danio rerio (zebrafish) ]

    Gene ID: 100170812, updated on 12-Sep-2024

    Summary

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    Official Symbol
    jac11provided by ZNC
    Official Full Name
    jacalin 11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160114-65
    See related
    Ensembl:ENSDARG00000076388 AllianceGenome:ZFIN:ZDB-GENE-160114-65
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:194686; si:dkeyp-32g11.6
    Orthologs
    all
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    Genomic context

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    See jac11 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8406686..8408012, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8160728..8162054, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene aerolysin-like protein Neighboring gene jacalin 10 Neighboring gene jacalin 1 Neighboring gene aerolysin-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolutionary analysis of the jacalin-related lectin family genes in 11 fishes. Cao J, et al. Fish Shellfish Immunol, 2016 Sep. PMID 27514782
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Natterin-like protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130647.1 → NP_001124119.1  Natterin-like protein-like

      See identical proteins and their annotated locations for NP_001124119.1

      Status: PROVISIONAL

      Source sequence(s)
      BC163696
      UniProtKB/TrEMBL
      B3DK25
      Related
      ENSDARP00000100908.1, ENSDART00000112492.2
      Conserved Domains (1) summary
      cd09302
      Location:17 → 138
      Jacalin_like; Jacalin-like lectin domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      8406686..8408012 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials