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    Gm3667 predicted gene 3667 [ Mus musculus (house mouse) ]

    Gene ID: 100042100, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm3667provided by MGI
    Official Full Name
    predicted gene 3667provided by MGI
    Primary source
    MGI:MGI:3781843
    See related
    Ensembl:ENSMUSG00000090691 AllianceGenome:MGI:3781843
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in CNS E18 (RPKM 1.3), CNS E14 (RPKM 0.7) and 16 other tissues See more
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    Genomic context

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    See Gm3667 in Genome Data Viewer
    Location:
    14 A2; 14 4.09 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15579183..15601273)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (6868500..6890560, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 10406 Neighboring gene STARR-seq mESC enhancer starr_35828 Neighboring gene predicted gene, 53833 Neighboring gene predicted gene, 26680 Neighboring gene predicted gene 3642 Neighboring gene predicted gene 3636

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC100042100
    Names
    alpha16-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374143.1 → NP_001361072.1  uncharacterized protein LOC100042100 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1-4 all encode the same isoform (a).
      Source sequence(s)
      AC130825
      Consensus CDS
      CCDS88558.1
      UniProtKB/TrEMBL
      A6NAS5, K7N757, Q7TMK7
      Conserved Domains (1) summary
      pfam04822
      Location:48 → 128
      Takusan

    2. NM_001374144.1 → NP_001361073.1  uncharacterized protein LOC100042100 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2), as well as variants 1, 3, and 4, encodes isoform a.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAS5, K7N757, Q7TMK7
      Conserved Domains (1) summary
      pfam04822
      Location:48 → 128
      Takusan

    3. NM_001374145.1 → NP_001361074.1  uncharacterized protein LOC100042100 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3), as well as variants 1, 2, and 4, encodes isoform a.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAS5, K7N757, Q7TMK7
      Conserved Domains (1) summary
      pfam04822
      Location:48 → 128
      Takusan

    4. NM_001374146.1 → NP_001361075.1  uncharacterized protein LOC100042100 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4), as well as variants 1-3, encodes isoform a.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAS5, K7N757, Q7TMK7
      Related
      ENSMUSP00000133107.2, ENSMUST00000171906.2
      Conserved Domains (1) summary
      pfam04822
      Location:48 → 128
      Takusan

    5. NM_001374147.1 → NP_001361076.1  uncharacterized protein LOC100042100 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5), as well as variants 6-8, encodes isoform b.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAR9, A6NAT3, A6NAV3
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    6. NM_001374148.1 → NP_001361077.1  uncharacterized protein LOC100042100 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6), as well as variants 5, 7, and 8, encodes isoform b.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAR9, A6NAT3, A6NAV3
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    7. NM_001374149.1 → NP_001361078.1  uncharacterized protein LOC100042100 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7), as well as variants 5, 6, and 8, encodes isoform b.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAR9, A6NAT3, A6NAV3
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    8. NM_001374150.1 → NP_001361079.1  uncharacterized protein LOC100042100 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8), as well as variants 5-7, encodes isoform b.
      Source sequence(s)
      AC130825
      UniProtKB/TrEMBL
      A6NAR9, A6NAT3, A6NAV3
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      15579183..15601273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158320.1 → XP_036014213.1  uncharacterized protein LOC100042100 isoform X2

      Conserved Domains (1) summary
      pfam04822
      Location:67 → 147
      Takusan

    2. XM_036158319.1 → XP_036014212.1  uncharacterized protein LOC100042100 isoform X1

      UniProtKB/TrEMBL
      A0AA74KSW7
      Conserved Domains (1) summary
      pfam04822
      Location:101 → 181
      Takusan
    Nucleotide Protein Strain
    Heading Accession and Version

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