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    Gm3558 predicted gene 3558 [ Mus musculus (house mouse) ]

    Gene ID: 100041874, updated on 17-Aug-2024

    Summary

    Official Symbol
    Gm3558provided by MGI
    Official Full Name
    predicted gene 3558provided by MGI
    Primary source
    MGI:MGI:3781735
    See related
    Ensembl:ENSMUSG00000079364 AllianceGenome:MGI:3781735
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E18 (RPKM 3.4), whole brain E14.5 (RPKM 1.8) and 11 other tissues See more
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    Genomic context

    See Gm3558 in Genome Data Viewer
    Location:
    14 A1; 14 4.45 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (14901207..14924622)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7545151..7568566, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38418 Neighboring gene alpha-takusan pseudogene Neighboring gene predicted gene 10338 Neighboring gene predicted gene 17121 Neighboring gene predicted gene, 46467 Neighboring gene predicted gene 3752 Neighboring gene predicted gene, 53825

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC107112

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270842.1NP_001257771.1  alpha19-takusan

      See identical proteins and their annotated locations for NP_001257771.1

      Status: VALIDATED

      Source sequence(s)
      BC089473
      Consensus CDS
      CCDS56936.1
      UniProtKB/TrEMBL
      A6NAS6, L7N2C2, Q5FWC9
      Related
      ENSMUSP00000130601.2, ENSMUST00000163790.2
      Conserved Domains (1) summary
      pfam04822
      Location:50125
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      14901207..14924622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)