calhm5.1 calcium homeostasis modulator family member 5, tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: calhm5.1provided by ZNC
Official Full Name: calcium homeostasis modulator family member 5, tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-070410-4
See related: Ensembl:ENSDARG00000074947 AllianceGenome:ZFIN:ZDB-GENE-070410-4
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fam26e; fam26e.1; zgc:136947
Summary: Predicted to enable monoatomic cation channel activity. Predicted to be involved in ATP export. Predicted to act upstream of or within monoatomic ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human CALHM5 (calcium homeostasis modulator family member 5). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (32216546..32221312, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (32251541..32267462, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables monoatomic cation channel activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in ATP export	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transmembrane transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: calcium homeostasis modulator protein 5

Names: family with sequence similarity 26, member E, tandem duplicate 1; protein FAM26E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089465.2 → NP_001082934.2 calcium homeostasis modulator protein 5

Status: VALIDATED

Source sequence(s)

CT027708

UniProtKB/Swiss-Prot

A4FUN9, A9JSX8

UniProtKB/TrEMBL

A0A0H2UKF9, A0A8M1NCY9

Related

ENSDARP00000099230.2, ENSDART00000112348.3

Conserved Domains (1) summary

pfam14798
Location:9 → 257

Ca_hom_mod; Calcium homeostasis modulator