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    st8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100036735, updated on 17-Aug-2024

    Summary

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    Official Symbol
    st8sia5provided by Xenbase
    Official Full Name
    ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5provided by Xenbase
    Primary source
    Xenbase:XB-GENE-988459
    See related
    Ensembl:ENSXETG00000039548
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See st8sia5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (206981814..207016857, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (193530877..193570791, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Neighboring gene lipoxygenase homology PLAT domains 1 Neighboring gene sialic acid binding Ig like lectin 15 Neighboring gene solute carrier family 14 (urea transporter), member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes. Harduin-Lepers A, et al. BMC Evol Biol, 2008 Sep 23. PMID 18811928, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sialyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    alpha-2,8-sialyltransferase 8E
    Names
    alpha-2,8-sialyltransferase ST8Sia V
    siat 8E
    NP_001090748.1
    XP_012812330.1
    XP_012812371.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097279.1 → NP_001090748.1  alpha-2,8-sialyltransferase 8E

      See identical proteins and their annotated locations for NP_001090748.1

      Status: PROVISIONAL

      Source sequence(s)
      AM422136
      UniProtKB/TrEMBL
      A2BCP7
      Conserved Domains (1) summary
      pfam00777
      Location:117 → 371
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      206981814..207016857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956876.3 → XP_012812330.1  alpha-2,8-sialyltransferase 8E isoform X1

      UniProtKB/TrEMBL
      A0A6I8S6X4
      Related
      ENSXETP00000090573.1, ENSXETT00000069571.2
      Conserved Domains (1) summary
      pfam00777
      Location:153 → 406
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    2. XM_012956917.3 → XP_012812371.1  alpha-2,8-sialyltransferase 8E isoform X2

      UniProtKB/TrEMBL
      A0A8J0SCJ0
      Conserved Domains (1) summary
      pfam00777
      Location:117 → 370
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
    Nucleotide Protein Strain
    Heading Accession and Version

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