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    si:dkey-204f11.3 si:dkey-204f11.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100034401, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-204f11.3provided by ZNC
    Official Full Name
    si:dkey-204f11.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040724-190
    See related
    Ensembl:ENSDARG00000092616 AllianceGenome:ZFIN:ZDB-GENE-040724-190
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-204f11.3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (34111957..34112677)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (33982449..33983169)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin heavy constant delta Neighboring gene uncharacterized LOC137489848 Neighboring gene immunoglobulin heavy variable 4-3 Neighboring gene immunoglobulin heavy variable 3-30 Neighboring gene aldehyde dehydrogenase 3 family, member B1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100034401

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083048.1 → NP_001076517.1  uncharacterized protein LOC100034401

      Status: PREDICTED

      Source sequence(s)
      BX649502
      UniProtKB/TrEMBL
      A0A8M1NCG0, Q5PNN0
      Related
      ENSDARP00000120584.1, ENSDART00000142415.2
      Conserved Domains (1) summary
      pfam04505
      Location:70 → 142
      CD225; Interferon-induced transmembrane protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      34111957..34112677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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