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    si:ch1073-365p7.2 si:ch1073-365p7.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100007341, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch1073-365p7.2provided by ZNC
    Official Full Name
    si:ch1073-365p7.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160114-38
    See related
    Ensembl:ENSDARG00000105317 AllianceGenome:ZFIN:ZDB-GENE-160114-38
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTP binding activity. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch1073-365p7.2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (44491687..44498915, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (44229868..44237031, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), beta polypeptide 4b Neighboring gene filamin A interacting protein 1-like Neighboring gene interleukin 1 receptor accessory protein-like 1b Neighboring gene mitofusin 1b Neighboring gene endoplasmic reticulum oxidoreductase 1 beta Neighboring gene G protein-coupled receptor 137Bb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    GTPase IMAP family member 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      44491687..44498915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479926.2 → XP_021335601.1  GTPase IMAP family member 8

      UniProtKB/TrEMBL
      A0A8M9QID3
      Related
      ENSDARP00000142142.1, ENSDART00000173066.2
      Conserved Domains (1) summary
      cl21455
      Location:259 → 443
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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