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    mgarpa mitochondria localized glutamic acid rich protein a [ Danio rerio (zebrafish) ]

    Gene ID: 100002196, updated on 2-Nov-2024

    Summary

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    Official Symbol
    mgarpaprovided by ZNC
    Official Full Name
    mitochondria localized glutamic acid rich protein aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141219-2
    See related
    Ensembl:ENSDARG00000071353 AllianceGenome:ZFIN:ZDB-GENE-141219-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-235e9.8
    Summary
    Predicted to act upstream of or within anterograde axonal transport. Predicted to be located in membrane and mitochondrion. Orthologous to human MGARP (mitochondria localized glutamic acid rich protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mgarpa in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (46076460..46113357, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (47087019..47126085, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene nocturnin a Neighboring gene E74-like factor 2a (ets domain transcription factor) Neighboring gene NADH:ubiquinone oxidoreductase subunit C1 Neighboring gene N-alpha-acetyltransferase 15, NatA auxiliary subunit a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The differential spatiotemporal expression pattern of shelterin genes throughout lifespan. Wagner KD, et al. Aging (Albany NY), 2017 Apr. PMID 28437249, Free PMC Article
    2. Gene Characterization of Nocturnin Paralogues in Goldfish: Full Coding Sequences, Structure, Phylogeny and Tissue Expression. Madera D, et al. Int J Mol Sci, 2023 Dec 19. PMID 38203224, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within anterograde axonal transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100002196
    Names
    protein MGARP-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282050.2 → NP_001268979.1  uncharacterized protein LOC100002196 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL929007, EH432691, EH468711
      UniProtKB/TrEMBL
      A0A0R4IRN7, A0A8M1P646
      Related
      ENSDARP00000136860.1, ENSDART00000161475.2
      Conserved Domains (1) summary
      pfam14962
      Location:13 → 90
      AIF-MLS; Mitochondria Localization Sequence

    2. NM_001328045.1 → NP_001314974.1  uncharacterized protein LOC100002196 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL929007, EH446635
      UniProtKB/TrEMBL
      A0A0R4IGB5, A0A8M1P8Q0
      Related
      ENSDARP00000133493.1, ENSDART00000169040.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      46076460..46113357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009291247.3 → XP_009289522.1  uncharacterized protein LOC100002196 isoform X2

      UniProtKB/TrEMBL
      A0A8M3B0J0
      Conserved Domains (1) summary
      pfam14962
      Location:20 → 174
      AIF-MLS; Mitochondria Localization Sequence

    2. XM_009291249.3 → XP_009289524.1  uncharacterized protein LOC100002196 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AS86
      Conserved Domains (1) summary
      pfam14962
      Location:20 → 175
      AIF-MLS; Mitochondria Localization Sequence

    3. XM_005169620.4 → XP_005169677.1  uncharacterized protein LOC100002196 isoform X3

      UniProtKB/TrEMBL
      A0A8M2BH14, E7F5B6
      Related
      ENSDARP00000107832.1, ENSDART00000124925.3
      Conserved Domains (1) summary
      pfam14962
      Location:20 → 175
      AIF-MLS; Mitochondria Localization Sequence
    Nucleotide Protein Strain
    Heading Accession and Version

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