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    fbxo30a F-box protein 30a [ Danio rerio (zebrafish) ]

    Gene ID: 100001417, updated on 2-Nov-2024

    Summary

    Official Symbol
    fbxo30aprovided by ZNC
    Official Full Name
    F-box protein 30aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1215
    See related
    Ensembl:ENSDARG00000058561 AllianceGenome:ZFIN:ZDB-GENE-040426-1215
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fbxo30; zgc:63656
    Summary
    Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Orthologous to human FBXO30 (F-box protein 30). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See fbxo30a in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (7620240..7628458)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (7463062..7471280)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene SNF2 histone linker PHD RING helicase Neighboring gene si:dkeyp-110a12.4 Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene utrophin, pseudogene Neighboring gene transfer RNA leucine (anticodon UAA)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC63656

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    F-box only protein 30a
    Names
    F-box protein 30

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201151.1NP_957445.1  F-box only protein 30a

      See identical proteins and their annotated locations for NP_957445.1

      Status: PROVISIONAL

      Source sequence(s)
      BC055189
      UniProtKB/TrEMBL
      Q7SXZ3
      Related
      ENSDARP00000075888.3, ENSDART00000081447.4
      Conserved Domains (2) summary
      pfam15965
      Location:597
      zf-TRAF_2; TRAF-like zinc-finger
      pfam15966
      Location:608716
      F-box_4; F-box

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      7620240..7628458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)