cDNA cloning and chromosomal localization of the human and mouse isoforms of Ksp-cadherin

Genomics. 1998 Aug 1;51(3):445-51. doi: 10.1006/geno.1998.5402.

Abstract

Ksp-cadherin is a novel kidney-specific member of the cadherin superfamily of cell adhesion molecules. We have determined the complete cDNA coding sequences of both the human and the mouse isoforms of Ksp-cadherin. The inferred amino acid sequences of the human and mouse isoforms are 79 and 75% identical to the originally described rabbit isoform of Ksp-cadherin (Thomson et al., 1995; J. Biol. Chem. 270, 17594-17601), respectively. The relative locations of cadherin-specific sequence motifs, putative N-glycosylation sites, and characteristic protein domains are entirely conserved in all three isoforms. Multiple organ Northern analyses indicate that, as in the rabbit, both the human and the mouse Ksp-cadherin transcripts appear to have distinct kidney-specific distributions. The human Ksp-cadherin gene (CDH16) maps to chromosome 16q21-proximal 16q22. The mouse Ksp-cadherin gene (Cdh16) was localized to a highly syntenic region of distal Chromosome 8. Both the human and the mouse Ksp-cadherin genes were localized to previously identified clusters of cadherin gene sequences, consistent with the hypothesis that most cadherin family members arose by gene duplication from a single ancestral gene at a relatively early stage in the evolution of the mammalian genome.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Cadherins / chemistry*
  • Cell Adhesion Molecules / chemistry*
  • Chromosome Mapping*
  • Chromosomes, Human, Pair 16 / genetics
  • Cloning, Molecular
  • Humans
  • In Situ Hybridization, Fluorescence
  • Kidney / physiology*
  • Mice
  • Mice, Inbred Strains
  • Molecular Sequence Data
  • Multigene Family / genetics
  • RNA, Messenger / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • CDH16 protein, human
  • Cadherins
  • Cdh16 protein, mouse
  • Cell Adhesion Molecules
  • RNA, Messenger

Associated data

  • GENBANK/AF016271
  • GENBANK/AF016272