In Vivo Biosynthesis of a β-Amino Acid-Containing Protein

J Am Chem Soc. 2016 Apr 27;138(16):5194-7. doi: 10.1021/jacs.6b01023. Epub 2016 Apr 18.

Abstract

It has recently been reported that ribosomes from erythromycin-resistant Escherichia coli strains, when isolated in S30 extracts and incubated with chemically mis-acylated tRNA, can incorporate certain β-amino acids into full length DHFR in vitro. Here we report that wild-type E. coli EF-Tu and phenylalanyl-tRNA synthetase collaborate with these mutant ribosomes and others to incorporate β(3)-Phe analogs into full length DHFR in vivo. E. coli harboring the most active mutant ribosomes are robust, with a doubling time only 14% longer than wild-type. These results reveal the unexpected tolerance of E. coli and its translation machinery to the β(3)-amino acid backbone and should embolden in vivo selections for orthogonal translational machinery components that incorporate diverse β-amino acids into proteins and peptides. E. coli harboring mutant ribosomes may possess the capacity to incorporate many non-natural, non-α-amino acids into proteins and other sequence-programmed polymeric materials.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acyl-tRNA Synthetases / chemistry
  • Amino Acyl-tRNA Synthetases / metabolism*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / metabolism*
  • Molecular Dynamics Simulation
  • Mutation
  • Peptide Elongation Factor Tu / metabolism*
  • Phenylalanine / analogs & derivatives*
  • Phenylalanine / metabolism
  • Phenylalanine-tRNA Ligase / metabolism
  • Protein Engineering / methods*
  • RNA, Ribosomal, 23S
  • Substrate Specificity
  • Tetrahydrofolate Dehydrogenase / genetics
  • Tetrahydrofolate Dehydrogenase / metabolism

Substances

  • Escherichia coli Proteins
  • RNA, Ribosomal, 23S
  • Phenylalanine
  • Tetrahydrofolate Dehydrogenase
  • Peptide Elongation Factor Tu
  • Amino Acyl-tRNA Synthetases
  • Phenylalanine-tRNA Ligase