Structure-based Discovery of Novel Small Molecule Wnt Signaling Inhibitors by Targeting the Cysteine-rich Domain of Frizzled

J Biol Chem. 2015 Dec 18;290(51):30596-606. doi: 10.1074/jbc.M115.673202. Epub 2015 Oct 26.

Abstract

Frizzled is the earliest discovered glycosylated Wnt protein receptor and is critical for the initiation of Wnt signaling. Antagonizing Frizzled is effective in inhibiting the growth of multiple tumor types. The extracellular N terminus of Frizzled contains a conserved cysteine-rich domain that directly interacts with Wnt ligands. Structure-based virtual screening and cell-based assays were used to identify five small molecules that can inhibit canonical Wnt signaling and have low IC50 values in the micromolar range. NMR experiments confirmed that these compounds specifically bind to the Wnt binding site on the Frizzled8 cysteine-rich domain with submicromolar dissociation constants. Our study confirms the feasibility of targeting the Frizzled cysteine-rich domain as an effective way of regulating canonical Wnt signaling. These small molecules can be further optimized into more potent therapeutic agents for regulating abnormal Wnt signaling by targeting Frizzled.

Keywords: Wnt signaling; anticancer drug; drug discovery; molecular docking; nuclear magnetic resonance (NMR).

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3T3 Cells
  • Animals
  • Antineoplastic Agents / chemistry*
  • Antineoplastic Agents / pharmacology*
  • Binding Sites
  • Drug Screening Assays, Antitumor
  • Frizzled Receptors / antagonists & inhibitors*
  • Frizzled Receptors / chemistry*
  • HEK293 Cells
  • Humans
  • Mice
  • Molecular Docking Simulation*
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Structure, Tertiary
  • Wnt Signaling Pathway / drug effects*

Substances

  • Antineoplastic Agents
  • Frizzled Receptors

Associated data

  • PDB/1IJY
  • PDB/4F0A