Structural analysis of the KRIT1 ankyrin repeat and FERM domains reveals a conformationally stable ARD-FERM interface

J Struct Biol. 2015 Dec;192(3):449-456. doi: 10.1016/j.jsb.2015.10.006. Epub 2015 Oct 14.

Abstract

Cerebral cavernous malformations (CCM) are vascular dysplasias that usually occur in the brain and are associated with mutations in the KRIT1/CCM1, CCM2/MGC4607/OSM/Malcavernin, and PDCD10/CCM3/TFAR15 genes. Here we report the 2.9 Å crystal structure of the ankyrin repeat domain (ARD) and FERM domain of the protein product of KRIT1 (KRIT1; Krev interaction trapped 1). The crystal structure reveals that the KRIT1 ARD contains 4 ankyrin repeats. There is an unusual conformation in the ANK4 repeat that is stabilized by Trp-404, and the structure reveals a solvent exposed ankyrin groove. Domain orientations of the three copies within the asymmetric unit suggest a stable interaction between KRIT1 ARD and FERM domains, indicating a globular ARD-FERM module. This resembles the additional F0 domain found N-terminal to the FERM domain of talin. Structural analysis of KRIT1 ARD-FERM highlights surface regions of high evolutionary conservation, and suggests potential sites that could mediate interaction with binding partners. The structure therefore provides a better understanding of KRIT1 at the molecular level.

Keywords: Ankyrin repeat; Cerebral cavernous malformations; Crystal structure; Protein complex; X-ray crystallography.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acid Sequence
  • Ankyrin Repeat / physiology*
  • Brain / pathology
  • Crystallography, X-Ray
  • Hemangioma, Cavernous, Central Nervous System / genetics
  • Humans
  • KRIT1 Protein
  • Microtubule-Associated Proteins / genetics
  • Microtubule-Associated Proteins / ultrastructure*
  • Molecular Sequence Data
  • Protein Binding / genetics
  • Protein Structure, Tertiary
  • Proto-Oncogene Proteins / genetics
  • Proto-Oncogene Proteins / ultrastructure*
  • Sequence Alignment

Substances

  • KRIT1 Protein
  • KRIT1 protein, human
  • Microtubule-Associated Proteins
  • Proto-Oncogene Proteins

Associated data

  • PDB/5D68