ATP-dependent chromatin remodeling by the Saccharomyces cerevisiae homologous recombination factor Rdh54

J Biol Chem. 2008 Apr 18;283(16):10445-52. doi: 10.1074/jbc.M800082200. Epub 2008 Feb 20.

Abstract

Saccharomyces cerevisiae RDH54 is a key member of the evolutionarily conserved RAD52 epistasis group of genes needed for homologous recombination and DNA double strand break repair. The RDH54-encoded protein possesses a DNA translocase activity and functions together with the Rad51 recombinase in the D-loop reaction. By chromatin immunoprecipitation (ChIP), we show that Rdh54 is recruited, in a manner that is dependent on Rad51 and Rad52, to a site-specific DNA double strand break induced by the HO endonuclease. Because of its relatedness to Swi2/Snf2 chromatin remodelers, we have asked whether highly purified Rdh54 possesses chromatin-remodeling activity. Importantly, our results show that Rdh54 can mobilize a mononucleosome along DNA and render nucleosomal DNA accessible to a restriction enzyme, indicative of a chromatin-remodeling function. Moreover, Rdh54 co-operates with Rad51 in the utilization of naked or chromatinized DNA as template for D-loop formation. We also provide evidence for a strict dependence of the chromatin-remodeling attributes of Rdh54 on its ATPase activity and N-terminal domain. Interestingly, an N-terminal deletion mutant (rdh54Delta102) is unable to promote Rad51-mediated D-loop formation with a chromatinized template, while retaining substantial activity with naked DNA. These features of Rdh54 suggest a role of this protein factor in chromatin rearrangement during DNA recombination and repair.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenosine Triphosphatases / chemistry
  • Adenosine Triphosphate / metabolism*
  • Chromatin / chemistry
  • Chromatin / metabolism*
  • DNA / metabolism
  • DNA Helicases
  • DNA Repair
  • DNA Repair Enzymes
  • DNA Topoisomerases
  • Gene Deletion
  • Gene Expression Regulation, Fungal*
  • Models, Biological
  • Mutation
  • Nucleosomes / metabolism
  • Protein Structure, Tertiary
  • Rad51 Recombinase / metabolism
  • Recombination, Genetic
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / metabolism*

Substances

  • Chromatin
  • Nucleosomes
  • Saccharomyces cerevisiae Proteins
  • Adenosine Triphosphate
  • DNA
  • RAD51 protein, S cerevisiae
  • Rad51 Recombinase
  • Adenosine Triphosphatases
  • RAD54 protein, S cerevisiae
  • DNA Helicases
  • DNA Topoisomerases
  • RDH54 protein, S cerevisiae
  • DNA Repair Enzymes